I think there's a bug with the backup/restore on magento 2.x where it will appear to restore ok but due to broken symlinks it causes it to be a broken install.
E.g on my test server.
[Sun Oct 23 00:50:18 2016] [error] [client 192.168.6.21] Symbolic link not allowed or link target not accessible: /home/admin/public_html/magento2/pub/static/frontend/Magento/luma/en_US/Magento_Ui/js/lib/knockout/extender/bound-nodes.js, referer: Url removed/magento2/
[Sun Oct 23 00:50:18 2016] [error] [client 192.168.6.21] Symbolic link not allowed or link target not accessible: /home/admin/public_html/magento2/pub/static/frontend/Magento/luma/en_US/Magento_Ui/js/lib/knockout/extender/observable_array.js, referer: Url removed/magento2/
[Sun Oct 23 00:50:26 2016] [error] [client 192.168.6.21] Symbolic link not allowed or link target not accessible: /home/admin/public_html/magento2/pub/static/frontend/Magento/luma/en_US/Magento_Ui/js/lib/knockout/template/engine.js, referer: Url removed/magento2/catalogsearch/result/?q=five
[Sun Oct 23 00:50:26 2016] [error] [client 192.168.6.21] Symbolic link not allowed or link target not accessible: /home/admin/public_html/magento2/pub/static/frontend/Magento/luma/en_US/Magento_Ui/js/lib/knockout/extender/observable_array.js, referer: Url removed/magento2/catalogsearch/result/?q=five
[Sun Oct 23 00:50:26 2016] [error] [client 192.168.6.21] Symbolic link not allowed or link target not accessible: /home/admin/public_html/magento2/pub/static/frontend/Magento/luma/en_US/Magento_Ui/js/lib/knockout/bindings/bootstrap.js, referer: Url removed/magento2/catalogsearch/result/?q=five
[Sun Oct 23 00:50:26 2016] [error] [client 192.168.6.21] Symbolic link not allowed or link target not accessible: /home/admin/public_html/magento2/pub/static/frontend/Magento/luma/en_US/Magento_Ui/js/lib/knockout/extender/bound-nodes.js, referer: Url removed/magento2/catalogsearch/result/?q=five
[Sun Oct 23 00:50:31 2016] [error] [client 192.168.6.21] Symbolic link not allowed or link target not accessible: /home/admin/public_html/magento2/pub/static/frontend/Magento/luma/en_US/Magento_Ui/js/lib/knockout/template/engine.js, referer: Url removed/magento2/five-nights-at-freddy-s-freddy-t-shirt-mens.html
[Sun Oct 23 00:50:31 2016] [error] [client 192.168.6.21] Symbolic link not allowed or link target not accessible: /home/admin/public_html/magento2/pub/static/frontend/Magento/luma/en_US/Magento_Ui/js/lib/knockout/bindings/bootstrap.js, referer: Url removed/magento2/five-nights-at-freddy-s-freddy-t-shirt-mens.html
[Sun Oct 23 00:50:31 2016] [error] [client 192.168.6.21] Symbolic link not allowed or link target not accessible: /home/admin/public_html/magento2/pub/static/frontend/Magento/luma/en_US/Magento_Ui/js/lib/knockout/extender/bound-nodes.js, referer: Url removed/magento2/five-nights-at-freddy-s-freddy-t-shirt-mens.html
[Sun Oct 23 00:50:31 2016] [error] [client 192.168.6.21] Symbolic link not allowed or link target not accessible: /home/admin/public_html/magento2/pub/static/frontend/Magento/luma/en_US/Magento_Ui/js/lib/knockout/extender/observable_array.js, referer: Url removed/magento2/five-nights-at-freddy-s-freddy-t-shirt-mens.html
Edited the URL as the forum wouldn't let me post link.s
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