The latest version of Script packages are downloaded automatically on your server.
For Moodle we had added it as a separate branch and if you have disabled auto adding of new scripts option from Softaculous admin panel. you will need to enable it from Softaculous Admin panel -> Software
That seems like a generic reply. T tried this already before posting this thread. However I have can see different moodle versions available on WHM >> Softaculous >> Software >> General Scripts.
I have enabled version "3.1" and "Updated Settings" but cPanel end users still only having the 2.6.11 version.
I can see two moodle versions in softaculous directory.